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Top bioinformatics tools ranked by usage across 144 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 104 | GeneAbacus | Transcriptomics | Transcriptomics | 26.7 | +3% |
| 105 | GeneiASE | Transcriptomics | Transcriptomics | 26.7 | +3% |
Data as of: Apr 12, 2026
| 13 | gffcompare | Transcriptomics | Transcriptomics | 38.86 | +8% |
| 14 | gffread | Transcriptomics | Transcriptomics | 38.86 | +8% |
| 131 | GSEA (Gene Set Enrichment Analysis) | Transcriptomics | Transcriptomics | 26.4 | +3% |
| 106 | GSVA | Transcriptomics | Transcriptomics | 26.7 | +3% |
| 75 | HOMER (Hypergeometric Optimization of Motif EnRichment) | Transcriptomics | Transcriptomics | 29.7 | +3% |
| 34 | IsoformSwitchAnalyzeR | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 76 | IsoQuant | Transcriptomics | Transcriptomics | 29.7 | +3% |
| 4 | Kallisto | Transcriptomics | Transcriptomics | 63.88 | +17% |