GeneiASE

Use when working with ASEQ — Allele-Specific Expression Quantification — an R command-line tool for detecting allelic imbalance from RNA-seq data. Counts reference and alternative allele reads at hete

2 shared topics • 1 shared operation

Use when working with CellRegMap — a Python framework for mapping context-specific genetic effects (sc-eQTL) in single-cell RNA-seq data. CellRegMap models genotype × cell-state interactions using a l

2 shared topics • 1 shared operation

Use when working with eQTL Catalogue — a uniformly processed, open-access resource of expression quantitative trait loci (eQTL) summary statistics from 100+ studies across bulk tissues, primary cell t

2 shared topics • 1 shared operation

PredictDB builds elastic-net genetic prediction models of gene expression stored as SQLite .db files for use with PrediXcan, S-PrediXcan, and S-MultiXcan TWAS workflows. Use this skill for training ex

2 shared topics • 1 shared operation

QuASAR (Quantitative Allele-Specific Analysis of Reads) — R package for detecting allele-specific expression (ASE) and allelic imbalance from RNA-seq data. Uses a beta-binomial model to test for ASE a

2 shared topics • 1 shared operation