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Top bioinformatics tools ranked by usage across 144 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 55 | Trinotate | Transcriptomics | Transcriptomics | 35.8 | +8% |
| 56 | tximeta | Transcriptomics | Transcriptomics | 35.8 |
Data as of: Apr 12, 2026
| 57 | WGCNA | Transcriptomics | Transcriptomics | 35.8 | +8% |
| 31 | ballgown | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 32 | clusterProfiler | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 33 | CytoTRACE -- Predicting Differentiation State from scRNA-seq | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 34 | IsoformSwitchAnalyzeR | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 35 | limma-voom | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 36 | Pathfindr | Transcriptomics | Transcriptomics | 35.86 | +5% |
| 37 | pyGenomeTracks | Transcriptomics | Transcriptomics | 35.86 | +8% |