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Top bioinformatics tools ranked by usage across 104 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1 | Seurat | Single-Cell | Single-Cell | 59.08 | +17% |
| 5 | Estimate Compute Requirements | Single-Cell | Single-Cell | 40.3 |
Data as of: Apr 12, 2026
| 10 | Souporcell | Single-Cell | Single-Cell | 38.8 | +10% |
| 2 | Scanpy | Single-Cell | Single-Cell | 44.92 | +8% |
| 3 | Cell Ranger | Single-Cell | Single-Cell | 42.94 | +8% |
| 4 | Seacells | Single-Cell | Single-Cell | 40.6 | +8% |
| 6 | Nebulosa | Single-Cell | Single-Cell | 39.7 | +8% |
| 7 | chromVAR | Single-Cell | Single-Cell | 38.86 | +8% |
| 8 | SnapATAC2 | Single-Cell | Single-Cell | 38.86 | +8% |
| 9 | BUStools | Single-Cell | Single-Cell | 38.8 | +8% |