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Top bioinformatics tools ranked by usage across 104 tools.
Data as of: Apr 12, 2026
| 4 | Seacells | Single-Cell | Single-Cell | 40.6 | +8% |
| 1 | Seurat | Single-Cell | Single-Cell | 59.08 | +17% |
| 23 | Signac | Single-Cell | Single-Cell | 35.86 | +8% |
| 79 | SingleR | Single-Cell | Single-Cell | 26.7 | +3% |
| 8 | SnapATAC2 | Single-Cell | Single-Cell | 38.86 | +8% |
| 10 | Souporcell | Single-Cell | Single-Cell | 38.8 | +10% |
| 24 | SoupX | Single-Cell | Single-Cell | 35.86 | +8% |
| 80 | Space Ranger | Single-Cell | Single-Cell | 26.7 | +3% |