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Top bioinformatics tools ranked by usage across 104 tools.
Data as of: Apr 12, 2026
| 42 | MuData | Single-Cell | Single-Cell | 35.74 | +8% |
| 30 | Muon | Single-Cell | Single-Cell | 35.8 | +8% |
| 6 | Nebulosa | Single-Cell | Single-Cell | 39.7 | +8% |
| 53 | NicheNet | Single-Cell | Single-Cell | 29.34 | +3% |
| 73 | OneK1K Tools | Single-Cell | Single-Cell | 26.7 | +3% |
| 101 | openCyto | Single-Cell | Single-Cell | 21.9 | +3% |
| 43 | PAGA | Single-Cell | Single-Cell | 35.74 | +8% |
| 54 | Palantir | Single-Cell | Single-Cell | 29.34 | +3% |