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Top bioinformatics tools ranked by usage across 104 tools.
Data as of: Apr 12, 2026
| 23 | Signac | Single-Cell | Single-Cell | 35.86 | +8% |
| 24 | SoupX | Single-Cell | Single-Cell | 35.86 | +8% |
| 25 | stLearn | Single-Cell | Single-Cell | 35.86 | +8% |
| 26 | totalVI / MultiVI | Single-Cell | Single-Cell | 35.86 | +8% |
| 27 | Cumulus | Single-Cell | Single-Cell | 35.8 | +8% |
| 28 | MELD -- Quantifying Perturbation Effects at Single-Cell Resolution | Single-Cell | Single-Cell | 35.8 | +8% |
| 29 | Metacell | Single-Cell | Single-Cell | 35.8 | +8% |
| 30 | Muon | Single-Cell | Single-Cell | 35.8 | +8% |