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Top bioinformatics tools ranked by usage across 104 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 11 | kb-python | Single-Cell | Single-Cell | 38.74 | +8% |
| 12 | scib -- Single-Cell Integration Benchmarking | Single-Cell | Single-Cell | 38.74 |
Data as of: Apr 12, 2026
| 13 | DBSCAN | Single-Cell | Single-Cell | 37.66 | +8% |
| 14 | AnnData | Single-Cell | Single-Cell | 37.3 | +8% |
| 15 | CellPhoneDB | Single-Cell | Single-Cell | 36.34 | +8% |
| 16 | Decontx | Single-Cell | Single-Cell | 35.86 | +8% |
| 17 | Giotto Suite | Single-Cell | Single-Cell | 35.86 | +8% |
| 18 | Giotto Suite | Single-Cell | Single-Cell | 35.86 | +8% |
| 19 | Harmony -- Single-Cell Data Integration | Single-Cell | Single-Cell | 35.86 | +8% |
| 20 | LIGER | Single-Cell | Single-Cell | 35.86 | +8% |