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Top bioinformatics tools ranked by usage across 45 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1 | MultiQC | QC & Preprocessing | QC & Preprocessing | 65.2 | +17% |
| 2 | Cutadapt | QC & Preprocessing | QC & Preprocessing | 63.28 |
Data as of: Apr 12, 2026
| 3 | Filtlong | QC & Preprocessing | QC & Preprocessing | 60.76 | +15% |
| 4 | Chopper | QC & Preprocessing | QC & Preprocessing | 45.88 | +8% |
| 5 | fastp | QC & Preprocessing | QC & Preprocessing | 45.88 | +8% |
| 6 | NanoPlot | QC & Preprocessing | QC & Preprocessing | 45.88 | +8% |
| 7 | Falco | QC & Preprocessing | QC & Preprocessing | 45.82 | +8% |
| 8 | NanoFilt | QC & Preprocessing | QC & Preprocessing | 45.76 | +8% |
| 9 | BBDuk | QC & Preprocessing | QC & Preprocessing | 38.86 | +8% |
| 10 | FastQC | QC & Preprocessing | QC & Preprocessing | 38.86 | +8% |