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Top bioinformatics tools ranked by usage across 64 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 54 | GNPS / Feature-Based Molecular Networking (FBMN) | Proteomics | Proteomics | 26.7 | +3% |
| 29 | GraphSAGE | Proteomics | Proteomics | 35.74 |
Data as of: Apr 12, 2026
| 5 | Grits | Proteomics | Proteomics | 40.66 | +8% |
| 21 | IonQuant | Proteomics | Proteomics | 35.8 | +8% |
| 14 | MaxQuant | Proteomics | Proteomics | 35.86 | +8% |
| 22 | MetaboAnalyst | Proteomics | Proteomics | 35.8 | +8% |
| 43 | mokapot -- Semi-Supervised PSM Confidence Estimation | Proteomics | Proteomics | 29.34 | +3% |
| 40 | MSBooster | Proteomics | Proteomics | 29.4 | +3% |
| 23 | MSstats | Proteomics | Proteomics | 35.8 | +8% |
| 24 | MZmine 3 | Proteomics | Proteomics | 35.8 | +8% |