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Top bioinformatics tools ranked by usage across 64 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 53 | ESM-2 | Proteomics | Proteomics | 26.7 | +3% |
| 54 | GNPS / Feature-Based Molecular Networking (FBMN) | Proteomics | Proteomics | 26.7 | +3% |
Data as of: Apr 12, 2026
| 55 | Perseus | Proteomics | Proteomics | 26.7 | +3% |
| 56 | quantms | Proteomics | Proteomics | 26.7 | +3% |
| 57 | VARITY -- Variant Effect Prediction for Missense Variants | Proteomics | Proteomics | 26.7 | +3% |
| 49 | ProtTrans | Proteomics | Proteomics | 26.76 | +3% |
| 48 | PyTorch Geometric | Proteomics | Proteomics | 27.06 | +5% |
| 47 | pyOpenMS | Proteomics | Proteomics | 27.72 | +3% |
| 46 | PLIP (Protein-Ligand Interaction Profiler) | Proteomics | Proteomics | 28.8 | +3% |
| 43 | mokapot -- Semi-Supervised PSM Confidence Estimation | Proteomics | Proteomics | 29.34 | +3% |