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Top bioinformatics tools ranked by usage across 52 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1 | MUSCLE | Phylogenetics | Phylogenetics | 62.68 | +15% |
| 2 | MAFFT | Phylogenetics | Phylogenetics | 45.88 | +8% |
Data as of: Apr 12, 2026
| 3 | trimAl | Phylogenetics | Phylogenetics | 45.82 | +8% |
| 4 | ClonalFrameML | Phylogenetics | Phylogenetics | 42.7 | +8% |
| 5 | matUtils | Phylogenetics | Phylogenetics | 41.8 | +10% |
| 6 | UShER | Phylogenetics | Phylogenetics | 41.8 | +10% |
| 7 | Pangolin | Phylogenetics | Phylogenetics | 38.86 | +8% |
| 8 | CD-HIT | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 9 | Gubbins | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 10 | Harvest Tools | Phylogenetics | Phylogenetics | 38.8 | +8% |