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Use when working with matUtils — a toolkit for querying, interpreting, and manipulating mutation-annotated trees (MATs) in protobuf format. Part of the UShER project. Supports subcommands for tree sum
Use with AI
Install the MCP server or CLI to instantly fetch matUtils documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/matutils
docker pull biocontainers/matutils:0.6.6Ensembl Compara — comparative genomics database and API from EMBL-EBI providing pairwise and multiple whole-genome alignments, gene trees, protein families, orthologues, paralogues, and synteny region
1 shared topic • 2 shared operations
TileDB-SOMA (Stack Of Matrices, Annotated) routing skill for single-cell and spatial omics data management. Use this when users need SOMA Experiment/ Collection/DataFrame workflows, AnnData/Seurat int
3 shared operations
Deep learning system for protein structure prediction from amino acid sequence with atomic accuracy — revolutionized structural biology.
1 shared topic • 1 shared operation
OrthoFinder — fast, accurate ortholog inference for comparative genomics. Identifies orthogroups, orthologs, gene trees, rooted species trees, and gene duplication events from protein or nucleotide se
1 shared topic • 1 shared operation
TASSEL (Trait Analysis by aSSociation, Evolution, and Linkage) is a Java-based software package for genome-wide association studies (GWAS), population genetics, and linkage disequilibrium analysis. Su
1 shared topic • 1 shared operation