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Top bioinformatics tools ranked by usage across 52 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 48 | IQ-TREE | Phylogenetics | Phylogenetics | 25.68 | +3% |
| 50 | IQ-TREE ModelFinder | Phylogenetics | Phylogenetics | 24.3 | +3% |
Data as of: Apr 12, 2026
| 31 | iTOL | Phylogenetics | Phylogenetics | 35.8 | +8% |
| 2 | MAFFT | Phylogenetics | Phylogenetics | 45.88 | +8% |
| 11 | Mashtree | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 5 | matUtils | Phylogenetics | Phylogenetics | 41.8 | +10% |
| 32 | MEGA (Molecular Evolutionary Genetics Analysis) | Phylogenetics | Phylogenetics | 35.8 | +8% |
| 49 | MetaPhlAn 4 / StrainPhlAn 4 | Phylogenetics | Phylogenetics | 25.38 | +3% |
| 17 | minimap2-Based Phylogenetics | Phylogenetics | Phylogenetics | 38.74 | +8% |
| 12 | MMseqs2 | Phylogenetics | Phylogenetics | 38.8 | +8% |