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Top bioinformatics tools ranked by usage across 52 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 11 | Mashtree | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 12 | MMseqs2 | Phylogenetics | Phylogenetics | 38.8 |
Data as of: Apr 12, 2026
| 13 | Nextclade CLI | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 14 | Panaroo | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 15 | phytools | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 16 | Roary | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 17 | minimap2-Based Phylogenetics | Phylogenetics | Phylogenetics | 38.74 | +8% |
| 18 | Clustal Omega | Phylogenetics | Phylogenetics | 36.76 | +10% |
| 19 | Snippy | Phylogenetics | Phylogenetics | 36.76 | +10% |
| 20 | SNP-sites | Phylogenetics | Phylogenetics | 36.76 | +10% |