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Top bioinformatics tools ranked by usage across 335 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1 | VEP (Ensembl Variant Effect Predictor) | Genomics | Genomics | 68.98 | +17% |
| 2 | SAMtools | Genomics | Genomics | 68.86 |
Data as of: Apr 12, 2026
| 3 | Picard | Genomics | Genomics | 65.08 | +15% |
| 4 | HMMER | Genomics | Genomics | 64.48 | +17% |
| 5 | Minimap2 | Genomics | Genomics | 64.48 | +15% |
| 6 | BEDTools | Genomics | Genomics | 64.12 | +17% |
| 7 | HISAT2 | Genomics | Genomics | 63.88 | +17% |
| 8 | Prokka | Genomics | Genomics | 63.4 | +15% |
| 9 | BCFtools | Genomics | Genomics | 48.34 | +10% |
| 10 | GATK (Genome Analysis Toolkit) | Genomics | Genomics | 47.86 | +10% |