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Use when working with V-pipe, the Snakemake workflow for within-sample viral sequencing analysis from Illumina or similar NGS reads. V-pipe organizes samples in a two-level directory hierarchy, suppor
Use with AI
Install the MCP server or CLI to instantly fetch V-pipe documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/v-pipe
docker pull biocontainers/v-pipe:3.0Tools and workflows for accessing, querying, and analyzing data from the 1000 Genomes Project (1KGP) — the largest public catalog of human genetic variation with whole-genome sequences from 3,202 indi
1 shared topic • 1 shared operation
CellTypist — automated cell type annotation for scRNA-seq using logistic regression with pre-trained immune models, majority voting refinement, multi-label classification, custom model training, cross
1 shared topic • 1 shared operation
featureCounts — ultrafast read counting program for assigning aligned reads (SAM/BAM) to genomic features such as genes, exons, promoters, and genomic bins. Part of the Subread package. Supports singl
1 shared topic • 1 shared operation
1 shared topic • 1 shared operation
VirSorter2 is a multi-classifier pipeline for identifying DNA and RNA viral sequences from metagenomic and genomic assemblies. It supports dsDNA phage, ssDNA, RNA, NCLDV, and lavidaviridae groups, out
1 shared topic • 1 shared operation