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Use when reconstructing T-cell receptor (TCR) or B-cell receptor (BCR) repertoires from bulk RNA-seq or single-cell RNA-seq data using TRUST4. Covers IMGT reference preparation, BAM/FASTQ input, CDR3
Use with AI
Install the MCP server or CLI to instantly fetch TRUST4 documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/trust4
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2 shared topics • 1 shared operation
MiXCR — full-featured immune repertoire analysis from raw FASTQ to clonotype tables. Align paired-end or single-end reads to V(D)J reference genes (TCR alpha/beta/gamma/delta, BCR heavy/light), assemb
2 shared topics • 1 shared operation
Use when working with pipeline-composer — pipeline-composer — compose
2 shared topics • 1 shared operation
Rcorrector — kmer-based error correction for RNA-seq reads. Corrects Illumina sequencing errors in FASTQ data using Jellyfish2 bloom filters and adaptive kmer frequency thresholds. Handles non-uniform
2 shared topics • 1 shared operation
SPAdes — de Bruijn graph genome assembler for Illumina, IonTorrent, and hybrid short+long read data. Modes: isolate (--isolate), metagenomics (--meta), single-cell MDA (--sc), plasmid recovery (--plas
2 shared topics • 1 shared operation