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Rcorrector — kmer-based error correction for RNA-seq reads. Corrects Illumina sequencing errors in FASTQ data using Jellyfish2 bloom filters and adaptive kmer frequency thresholds. Handles non-uniform
Use with AI
Install the MCP server or CLI to instantly fetch Rcorrector documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/rcorrector
DecontX — R/Bioconductor method in the celda package for estimating and removing ambient RNA contamination from droplet-based single-cell RNA-seq data. Uses a Bayesian Dirichlet mixture model over cel
3 shared topics • 1 shared operation
DoubletFinder — R package for detecting neotypic doublets in single-cell RNA-seq data using artificial nearest neighbor (pANN) scoring. Interfaces with Seurat objects (v2–v5) to identify heterotypic d
3 shared topics • 1 shared operation
DRAGEN (Dynamic Read Analysis for GENomics) — Illumina's FPGA-accelerated bioinformatics platform for secondary analysis of next-generation sequencing data. Performs hardware-accelerated mapping, alig
3 shared topics • 1 shared operation
Qualimap — platform-independent quality control tool for next-generation sequencing alignment data. Provides BAM QC (coverage, insert size, GC content, mapping quality), RNA-seq QC (gene body coverage
2 shared topics • 2 shared operations
SortMeRNA — fast filtering of ribosomal RNA reads from metatranscriptomic and RNA-seq data using local sequence alignment against curated rRNA databases (SILVA, RFAM). CLI tool for rRNA removal, rRNA
2 shared topics • 2 shared operations