Tandem Repeats Finder (TRF)

Ensembl Compara — comparative genomics database and API from EMBL-EBI providing pairwise and multiple whole-genome alignments, gene trees, protein families, orthologues, paralogues, and synteny region

1 shared topic • 3 shared operations

Ensembl REST API — HTTP/JSON web service for programmatic access to Ensembl genomic data without installing local databases. Supports gene/transcript/protein lookup by stable ID or gene symbol, sequen

1 shared topic • 3 shared operations

Sarek — nf-core Nextflow pipeline for germline and somatic variant calling from whole-genome sequencing (WGS), whole-exome sequencing (WES), and targeted sequencing data. Supports multiple variant cal

1 shared topic • 3 shared operations

Use when working with Sei — the FunctionLab sequence-to-activity deep learning framework for predicting chromatin profiles and regulatory activity from DNA sequences. Sei takes 4096 bp DNA windows and

1 shared topic • 3 shared operations

Zarr — chunked, compressed N-dimensional arrays for Python with cloud-native storage. Provides hierarchical groups, pluggable compression codecs (Blosc, Zstd, Gzip), sharding for large-scale datasets,

1 shared topic • 2 shared operations