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Use when working with tascCODA for tree-aggregated compositional analysis of high-throughput sequencing data, especially single-cell RNA-seq, microbiome, or amplicon count tables with a lineage or tax
Use with AI
Install the MCP server or CLI to instantly fetch tascCODA documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/tasccoda
Data-driven computational pipeline framework enabling scalable and reproducible scientific workflows using software containers.
3 shared topics • 1 shared operation
Analyze bioinformatics sample metadata to auto-detect data modality, column semantics, and sequencing platform from CSV/TSV files, SRA RunTables, GEO Series Matrix files, and AnnData .obs exports. Inf
3 shared topics
Benchmark and compare bioinformatics tools for a given analysis task using published benchmark data (accuracy, runtime, memory), PrecisionFDA and CAMI challenge results, bc7score community metrics, an
3 shared topics
SPAdes — de Bruijn graph genome assembler for Illumina, IonTorrent, and hybrid short+long read data. Modes: isolate (--isolate), metagenomics (--meta), single-cell MDA (--sc), plasmid recovery (--plas
3 shared topics
CytoTRACE -- computational method for predicting relative differentiation state of cells from single-cell RNA-seq data. Uses gene counts (number of detectably expressed genes per cell) as a robust pro
2 shared topics • 1 shared operation