scirpy -- Python toolkit for single-cell immune receptor (TCR and BCR) repertoire analysis built on the scverse ecosystem. Defines clonotypes from paired chain data using CDR3 nucleotide/amino acid se
Use with AI
Install the MCP server or CLI to instantly fetch scirpy -- Single-Cell Immune Receptor Analysis documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/scirpy
scRepertoire -- R package for analyzing T cell receptor (TCR) and B cell receptor (BCR) repertoires from single-cell sequencing data. Integrates with Seurat and SingleCellExperiment objects to combine
3 shared topics • 1 shared operation
Alleloscope — allele-specific copy number analysis and tumor clonality inference from single-cell multi-omics data (scDNA-seq and scATAC-seq). Estimates allele-specific copy number profiles using SNP
3 shared topics
Perturb-seq analysis tools including MIMOSCA (Multi-Input Multi-Output Single-Cell Analysis) for CRISPR perturbation screens with single-cell RNA-seq readout. Handles guide RNA assignment to cells, pe
3 shared topics
Tools for manipulating next-generation sequencing data stored in SAM/BAM/CRAM format, including sorting, indexing, and format conversion.
3 shared topics
Poetry is the Python dependency management and packaging tool for creating reproducible projects with pyproject.toml and poetry.lock. Use this skill for dependency resolution, virtual environment isol
2 shared topics • 1 shared operation