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Primer3 — the standard primer design engine for PCR, sequencing, cloning, and hybridization probe applications. Designs oligonucleotide primers from DNA template sequences with full thermodynamic cont
Use with AI
Install the MCP server or CLI to instantly fetch Primer3 documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/primer3
CNVkit -- Python toolkit for detecting copy number variants (CNVs) from targeted DNA sequencing data (hybrid capture, amplicon) and whole-genome sequencing (WGS). Leverages both on-target and off-targ
2 shared topics • 1 shared operation
CRISPR-DAV (CRISPR DNA Analysis and Visualization) is a pipeline for analyzing and visualizing CRISPR editing outcomes from amplicon sequencing (NGS) data. Detects indels, substitutions, HDR events, a
2 shared topics • 1 shared operation
CRISPResso2 — Python tool for quantifying CRISPR genome editing outcomes from amplicon sequencing data. Analyzes NHEJ (insertions, deletions), HDR, and mixed repair outcomes. Supports single amplicon
2 shared topics • 1 shared operation
Import, plot, and analyze bathymetric and topographic data in R. The `marmap` package provides helpers to query ETOPO bathymetry from NOAA, manipulate `bathy` grid objects, draw 2D and 3D seafloor map
2 shared topics • 1 shared operation
Pavian — interactive R/Shiny web application for metagenomics analysis and visualization. Reads classification reports from Kraken, Kraken2, Bracken, MetaPhlAn, DIAMOND+MEGAN, and Centrifuge to genera
2 shared topics • 1 shared operation