Poseidon

Use when working with bigsnpr — an R package for analysis of massive

1 shared topic • 2 shared operations

Use when working with MIP (Medical Information Process) — a workflow management system for clinical whole-genome and whole-exome sequencing analysis. Runs end-to-end rare disease (rd_dna, rd_rna) and

1 shared topic • 2 shared operations

Peddy — pedigree and sample QC tool for VCF files. Verifies sample sex from X-chromosome heterozygosity, checks relatedness against PED file expectations, predicts ancestry via PCA against 1000 Genome

1 shared topic • 2 shared operations

REViewer — haplotype-resolved visualization of read alignments at short tandem repeat (STR) loci detected by ExpansionHunter. Accepts a sorted BAM/CRAM file, an ExpansionHunter VCF, a reference FASTA,

1 shared topic • 2 shared operations

VCFtools — C++ toolkit for filtering, comparing, summarizing, converting, and manipulating VCF (Variant Call Format) and BCF files. Provides site and individual-level filtering, allele frequency calcu

1 shared topic • 2 shared operations