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REViewer — haplotype-resolved visualization of read alignments at short tandem repeat (STR) loci detected by ExpansionHunter. Accepts a sorted BAM/CRAM file, an ExpansionHunter VCF, a reference FASTA,
Use with AI
Install the MCP server or CLI to instantly fetch REViewer documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/reviewer
Use when working with bigsnpr — an R package for analysis of massive
2 shared topics • 2 shared operations
CNVkit -- Python toolkit for detecting copy number variants (CNVs) from targeted DNA sequencing data (hybrid capture, amplicon) and whole-genome sequencing (WGS). Leverages both on-target and off-targ
2 shared topics • 2 shared operations
IGV (Integrative Genomics Viewer) — high-performance Java desktop application for interactive visualization and exploration of genomic data. Supports BAM/CRAM alignments, VCF variants, BED/GFF annotat
2 shared topics • 2 shared operations
LINX — structural variant annotation and visualization tool from the Hartwig Medical Foundation hmftools suite. Interprets structural variants and copy number data to classify driver events including
2 shared topics • 2 shared operations
Peddy — pedigree and sample QC tool for VCF files. Verifies sample sex from X-chromosome heterozygosity, checks relatedness against PED file expectations, predicts ancestry via PCA against 1000 Genome
2 shared topics • 2 shared operations