POD5

blue-crab converts Oxford Nanopore Technology (ONT) sequencing data between POD5 and SLOW5/BLOW5 file formats. Use for long-read genomics workflows that require SLOW5/BLOW5 input (e.g., Buttery-eel ba

1 shared topic • 3 shared operations

buttery-eel — streaming Guppy/Dorado basecaller wrapper for Oxford Nanopore SLOW5/BLOW5 format long-read sequencing data. Streams reads from SLOW5 or BLOW5 files directly through a running Guppy serve

1 shared topic • 3 shared operations

HTSlib — C library and command-line utilities for reading, writing, indexing, and manipulating high-throughput sequencing data in SAM, BAM, CRAM, VCF, BCF, and tabix-indexed formats. Provides bgzip bl

1 shared topic • 3 shared operations

slow5lib and blue-crab — C library and Python tools for reading, writing, and converting Oxford Nanopore raw signal data in SLOW5/BLOW5 format. blue-crab converts between FAST5, POD5, and SLOW5/BLOW5

1 shared topic • 3 shared operations

slow5tools -- command-line toolkit for converting, compressing, merging, splitting, indexing, and extracting reads from SLOW5/BLOW5 format files. SLOW5/BLOW5 is an alternative to HDF5-based FAST5/POD5

1 shared topic • 3 shared operations