PlasmoDB Tools

Maftools — R package for analyzing somatic mutations from cancer sequencing (MAF files). Provides oncoplots for mutation visualization, clonality analysis, tumor burden estimation, mutational signatur

2 shared topics • 2 shared operations

medaka -- neural network-based tool from Oxford Nanopore Technologies for creating consensus sequences and calling variants from nanopore sequencing data. Polishes draft assemblies from Flye, miniasm,

2 shared topics • 1 shared operation

Open Targets Platform — large-scale target identification and prioritization resource integrating genetic, genomic, and disease evidence for drug target discovery. Provides REST API and Python client

2 shared topics • 1 shared operation

PharmGKB — Pharmacogenomics Knowledge Base for curated gene-drug relationships, clinical pharmacogenomics annotations, drug pathway diagrams, and VIP gene summaries. Query the PharmGKB REST API for va

2 shared topics • 1 shared operation

STRING-db — protein-protein interaction (PPI) network database and API covering known and predicted interactions for over 67 million proteins across 14,000 organisms. Query functional protein associat

2 shared topics • 1 shared operation