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Use when analyzing plant images for phenotyping with PlantCV. Handles visible (RGB), near-infrared (NIR), fluorescence, thermal, and hyperspectral imaging workflows. Performs image segmentation, shape
Use with AI
Install the MCP server or CLI to instantly fetch PlantCV documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/plantcv
Fiji/ImageJ — batteries-included distribution of ImageJ2 for scientific bioimage analysis. Batch macro scripting for cell counting, fluorescence quantification, and particle tracking. Bio-Formats supp
1 shared topic • 2 shared operations
Fiji/ImageJ — open-source scientific image analysis platform for life sciences. Provides image segmentation, particle analysis, cell tracking, colocalization, 3D visualization, and batch processing of
1 shared topic • 2 shared operations
ilastik — interactive machine learning toolkit for bioimage analysis. Provides pixel classification, object classification, autocontext, tracking, counting, carving (3D segmentation), and multicut bou
1 shared topic • 2 shared operations
Use when processing highly multiplexed tissue images with MCMICRO, the end-to-end Nextflow pipeline for CyCIF, CODEX, mIHC, and other cyclic immunofluorescence imaging modalities. Covers illumination
1 shared topic • 2 shared operations
Orfeo ToolBox (OTB) is an open-source library for remote sensing image processing. It provides a wide range of state-of-the-art algorithms for high-resolution optical, multispectral, and radar images.
1 shared topic • 1 shared operation