MCMICRO

CLAM (Clustering-constrained Attention Multiple instance learning) — weakly supervised computational pathology framework for whole slide image (WSI) classification and survival analysis. Processes gig

1 shared topic • 2 shared operations

ilastik — interactive machine learning toolkit for bioimage analysis. Provides pixel classification, object classification, autocontext, tracking, counting, carving (3D segmentation), and multicut bou

1 shared topic • 2 shared operations

Use when analyzing plant images for phenotyping with PlantCV. Handles visible (RGB), near-infrared (NIR), fluorescence, thermal, and hyperspectral imaging workflows. Performs image segmentation, shape

1 shared topic • 2 shared operations

Squidpy — spatial single-cell analysis toolkit in the scverse ecosystem for analyzing and visualizing spatial molecular data. Builds spatial neighbor graphs from tissue coordinates (Visium, Xenium, ME

1 shared topic • 2 shared operations

STARmap (Spatially-resolved Transcript Amplicon Readout mapping) — in situ spatial transcriptomics method that combines hydrogel-tissue chemistry with sequencing-by-hybridization (SEDAL) for multiplex

1 shared topic • 2 shared operations