PICRUSt2

FoodMicrobionet routing skill for food microbiome network analysis, food microbial ecology, and co-occurrence network construction from 16S rRNA amplicon data. Use this skill when users mention FoodMi

2 shared topics • 1 shared operation

geNomad — identify viruses and plasmids in metagenomic assemblies and isolate genomes using neural-network sequence embeddings and marker gene profiles. Classifies sequences as chromosome, plasmid, or

2 shared topics

Use when working with microeco — an R6-class R package for microbiome community ecology analysis. Handles OTU/ASV tables, taxonomy, sample metadata, and phylogenetic trees in a unified microtable obje

2 shared topics

NetCoMi (Network Construction and Comparison for Microbiome Data) — R package for constructing, analyzing, and comparing microbial association and dissimilarity networks from compositional count data.

2 shared topics

VIBRANT — metagenomics tool for identifying and annotating viruses from microbial assemblies (metagenomes, isolates, and virome datasets). Uses neural networks and KEGG/Pfam/VOG HMM profiles to classi

2 shared topics