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Use when working with PhaBOX2 PhaMer virus identification on assembled viral or phage contigs. This skill routes users to the documented `phabox2 --task phamer` workflow, including FASTA input prepara
Use with AI
Install the MCP server or CLI to instantly fetch PhaBOX2 PhaMer documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/phaboxphamer
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2 shared topics • 1 shared operation
LTR_retriever — command-line Perl tool for high-accuracy identification of Long Terminal Repeat retrotransposons (LTR-RTs) in plant and eukaryotic genomes. Filters raw LTRharvest and LTR_FINDER candid
2 shared topics • 1 shared operation
MaveDB utilities — search, download, and process variant effect scores from the MaveDB database of multiplexed assay for variant effect (MAVE) experiments. Supports fetching ScoreSets, Experiments, an
2 shared topics • 1 shared operation
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2 shared topics • 1 shared operation
SnpEff — fast Java-based variant annotation and effect prediction tool that annotates genomic variants (SNPs, indels, MNPs) with gene impact, protein changes, loss-of-function predictions, and HGVS no
2 shared topics • 1 shared operation