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PDBe tools and Molstar — EMBL-EBI Protein Data Bank in Europe REST API combined with the Molstar 3D macromolecular structure viewer for retrieving, validating, and visualizing protein, nucleic acid, a
Use with AI
Install the MCP server or CLI to instantly fetch PDBe Tools / Molstar documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/pdbe-tools-molstar
Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem
1 shared topic • 1 shared operation
gffread -- GFF/GTF utility for filtering, converting, and extracting sequences from genome annotation files. Converts between GFF3 and GTF formats, extracts transcript (FASTA) and protein sequences fr
1 shared topic • 1 shared operation
GRITS Toolbox is a free, open-source desktop application for processing, annotating, and archiving glycomics mass spectrometry data. It automates MS/MS spectral annotation of glycan fragments against
1 shared topic • 1 shared operation
MOFA+ (Multi-Omics Factor Analysis) — Bayesian group factor analysis framework for unsupervised integration of multiple omics data modalities. Discovers shared and modality-specific latent factors fro
1 shared topic • 1 shared operation
Query STRING API for protein-protein interaction networks, functional enrichment, and interaction partner discovery. Covers 59M proteins across 5000+ species with 20B+ scored interactions from 7 evide
1 shared topic • 1 shared operation