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Use when working with NeuronJ — an ImageJ/Fiji plugin for semi-automatic tracing and quantification of elongated image structures such as neurons, axons, dendrites, and neurites in microscopy images.
Use with AI
Install the MCP server or CLI to instantly fetch NeuronJ documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/neuronj
Fiji/ImageJ — batteries-included distribution of ImageJ2 for scientific bioimage analysis. Batch macro scripting for cell counting, fluorescence quantification, and particle tracking. Bio-Formats supp
1 shared topic • 1 shared operation
Use when processing or analyzing Magnetic Resonance Spectroscopy (MRS) data with FSL MRS. Covers spectral fitting, basis set generation, preprocessing, quantification, and quality control of 1H-MRS an
1 shared topic • 1 shared operation
ilastik — interactive machine learning toolkit for bioimage analysis. Provides pixel classification, object classification, autocontext, tracking, counting, carving (3D segmentation), and multicut bou
1 shared topic • 1 shared operation
Use when analyzing plant images for phenotyping with PlantCV. Handles visible (RGB), near-infrared (NIR), fluorescence, thermal, and hyperspectral imaging workflows. Performs image segmentation, shape
1 shared topic • 1 shared operation
TileDB for dense and sparse multi-dimensional arrays, data management, provenance-aware storage, and cloud/hybrid object-store access. Use this skill when users ask about TileDB Embedded, TileDB-Py, a
1 shared topic • 1 shared operation