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MRtrix3 — open-source neuroimaging toolkit for diffusion MRI (dMRI) analysis, including DWI preprocessing, fiber orientation distribution (FOD) estimation, probabilistic and deterministic tractography
Use with AI
Install the MCP server or CLI to instantly fetch MRtrix3 documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/mrtrix3
docker pull biocontainers/mrtrix3:3.0.8Use when analyzing EEG or MEG electrophysiology data with Brainstorm. Covers preprocessing (filtering, artifact rejection, ICA), source reconstruction (MNE, beamformer, dipole fitting), time-frequency
1 shared topic • 1 shared operation
Use this skill for ITK (Insight Segmentation and Registration Toolkit), the C++/Python library for medical image segmentation, registration, and filtering. Covers itk Python API for image I/O (DICOM,
1 shared topic • 1 shared operation
MNE-Python — open-source EEG, MEG, and iEEG data analysis for neuroscience and brain imaging. Process raw electrophysiology recordings: filtering, epoching, artifact rejection with ICA, event-related
1 shared topic • 1 shared operation
scikit-image — Python library for image processing built on NumPy arrays. Provides filtering (gaussian, sobel, median, thresholding), segmentation (watershed, slic, felzenszwalb, random_walker), featu
1 shared topic • 1 shared operation
SimpleITK — Python/multi-language interface to the Insight Toolkit (ITK) for medical image analysis. Supports image I/O (DICOM, NIfTI, MHA, MRC, NRRD, PNG/TIFF), image registration (rigid, affine, def
1 shared topic • 1 shared operation