A suite of tools for the MetaboLights open-access metabolomics data repository, including the metabolights-utils Python library and CLI for ISA-Tab file manipulation, study submission, and the mtbls-v
Use with AI
Install the MCP server or CLI to instantly fetch Metabolights Tools documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/metabolights-tools
GRITS Toolbox is a free, open-source desktop application for processing, annotating, and archiving glycomics mass spectrometry data. It automates MS/MS spectral annotation of glycan fragments against
1 shared topic • 1 shared operation
MS-DIAL — open-source software from RIKEN for untargeted metabolomics and lipidomics data processing. Provides deconvolution, peak picking, alignment, isotope and adduct annotation, compound identific
1 shared topic • 1 shared operation
xcms preprocesses LC-MS and GC-MS data in Bioconductor workflows. Use it for peak detection, retention-time alignment, feature grouping, and gap-filling when you need reproducible feature-by-sample in
1 shared topic • 1 shared operation
Molecular Transformer is an open-source sequence-to-sequence Transformer model (OpenNMT-py) for data-driven chemical reaction prediction and retrosynthesis planning. Trained on USPTO reaction datasets
1 shared topic
Uni-Mol universal 3D molecular representation learning framework for molecular property prediction, protein-ligand docking, drug-target interaction, and binding affinity scoring. Covers unimol_tools P
1 shared topic