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xcms preprocesses LC-MS and GC-MS data in Bioconductor workflows. Use it for peak detection, retention-time alignment, feature grouping, and gap-filling when you need reproducible feature-by-sample in
Use with AI
Install the MCP server or CLI to instantly fetch XCMS documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/xcms
Compound Discoverer routing skill for metabolomics and lipidomics LC-MS/MS data processing and compound identification using Thermo Fisher Scientific Compound Discoverer software. Use this skill when
2 shared topics • 1 shared operation
MetaboAnalyst — comprehensive R package and web platform for metabolomics data analysis and interpretation. Provides statistical analysis (t-test, ANOVA, PCA, PLS-DA), pathway analysis (KEGG, SMPDB),
2 shared topics
PathVisio biological pathway editor and analysis tool. Draw and edit biological pathways in GPML (Graphical Pathway Markup Language) format. Load gene expression or metabolomics data onto pathways for
2 shared topics
Bracken (Bayesian Reestimation of Abundance with KrakEN) — statistical method for computing species-level abundance estimates from Kraken/Kraken2/KrakenUniq taxonomic classifications. Redistributes re
1 shared topic • 1 shared operation
FINEMAP — Bayesian fine-mapping tool for identifying causal variants from GWAS summary statistics and linkage disequilibrium (LD) matrices. Uses shotgun stochastic search to enumerate causal configura
1 shared topic • 1 shared operation