Use when working with libRoadRunner (Python module: roadrunner) for SBML model simulation and analysis, including deterministic ODE integration (CVODE, rk4, rk45), stochastic simulation (gillespie), s
Use with AI
Install the MCP server or CLI to instantly fetch libRoadRunner documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/libroadrunner
Protégé is an open-source ontology editor and knowledge graph framework for creating, editing, and reasoning over OWL and RDF ontologies. Use for biomedical ontology development (Gene Ontology, SNOMED
1 shared topic • 2 shared operations
Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) — interactive visualization tool for de novo assembly graphs in GFA and FASTG formats. Visualize genome assembly gr
1 shared topic • 1 shared operation
ggplot2 — grammar of graphics implementation in R for creating complex, layered statistical visualizations. Supports scatter plots, bar charts, histograms, boxplots, heatmaps, faceted plots, and custo
1 shared topic • 1 shared operation
gt (Grammar of Tables) — R package for creating beautifully formatted, publication-ready display tables from data frames and tibbles. Provides a layered API for headers, spanners, column labels, numer
1 shared topic • 1 shared operation
Seaborn — statistical data visualization library built on matplotlib. Provides high-level functions for relational plots (scatterplot, lineplot), distribution plots (histplot, kdeplot, ecdfplot), cate
1 shared topic • 1 shared operation