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Kraken 2 — fast k-mer-based taxonomic sequence classifier for metagenomics. Assigns NCBI taxonomic labels to DNA/protein sequences using exact k-mer matching against a minimizer-indexed hash table. Su
Use with AI
Install the MCP server or CLI to instantly fetch Kraken 2 documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/kraken2
Use when working with cardrgi — CARD/RGI (Comprehensive Antibiotic Resistance
2 shared topics • 1 shared operation
DIAMOND — fast protein alignment and translated DNA search tool, operating at 100x-10,000x the speed of BLAST. Aligns protein query sequences against protein reference databases (blastp) or translated
2 shared topics • 1 shared operation
Use when working with dbCAN — run_dbcan — for CAZyme annotation of protein or genome sequences from metagenomics and microbiome studies. Annotates Carbohydrate-Active enZymes (CAZymes) including glyco
2 shared topics
scikit-learn — open-source Python machine learning library providing consistent estimator API for classification, regression, clustering, dimensionality reduction, model selection, and preprocessing.
2 shared topics
ShortBRED — metagenomics protein-family quantification tool from the bioBakery suite. Identifies short, representative peptide markers from protein families and quantifies their relative abundance in
2 shared topics