Inkscape

Use when working with GraphSAGE — Graph Sample and Aggregate — an inductive graph neural network framework for learning node embeddings on large graphs. Applies to biological network analysis: protein

2 shared topics • 1 shared operation

igraph — Fast, open-source C library with Python, R, and Mathematica interfaces for graph and network analysis. Used in biological network analysis, protein-protein interaction (PPI) networks, gene re

2 shared topics • 1 shared operation

Cytoscape.js — JavaScript graph theory library for network visualization and analysis in the browser and Node.js. Renders interactive biological networks, protein-protein interaction graphs, pathway d

2 shared topics

Use when working with NetworkX, graph analysis in Python, biological network analysis, protein-protein interaction networks, gene regulatory networks, metabolic networks, pathway analysis, network top

2 shared topics

ProDy — Python library for protein dynamics analysis and structural bioinformatics. Provides elastic network models (GNM, ANM), principal component analysis (PCA) of structural ensembles and MD trajec

2 shared topics