GenomeScope

Inspector — long-read-based genome assembly evaluation and error correction. Use for: assembly quality assessment, QV (quality value) score calculation, structural error detection, small-scale error p

2 shared topics • 2 shared operations

Jellyfish — fast, multi-threaded k-mer counter for DNA sequences. Counts exact k-mer frequencies in FASTA/FASTQ files using a lock-free hash table. Used for genome size estimation (flow cytometry-free

2 shared topics • 2 shared operations

nf-core/mag — Nextflow pipeline for metagenome-assembled genome (MAG) analysis. Takes raw short-read (Illumina) and/or long-read (Nanopore/PacBio) metagenomic sequencing data through quality control,

2 shared topics • 2 shared operations

nf-core/viralrecon — Nextflow pipeline for viral genome reconstruction and analysis from sequencing data. Supports Illumina and Oxford Nanopore reads for SARS-CoV-2, influenza, and other viral genomes

2 shared topics • 2 shared operations

Poetry is the Python dependency management and packaging tool for creating reproducible projects with pyproject.toml and poetry.lock. Use this skill for dependency resolution, virtual environment isol

2 shared topics • 1 shared operation