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Inspector — long-read-based genome assembly evaluation and error correction. Use for: assembly quality assessment, QV (quality value) score calculation, structural error detection, small-scale error p
Use with AI
Install the MCP server or CLI to instantly fetch Inspector documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/inspector
GenomeScope — reference-free genome profiling from k-mer count histograms. Estimates genome size, heterozygosity, and repeat content using a negative binomial mixture model. Supports diploid (GenomeSc
2 shared topics • 2 shared operations
nf-core/mag — Nextflow pipeline for metagenome-assembled genome (MAG) analysis. Takes raw short-read (Illumina) and/or long-read (Nanopore/PacBio) metagenomic sequencing data through quality control,
2 shared topics • 2 shared operations
nf-core/viralrecon — Nextflow pipeline for viral genome reconstruction and analysis from sequencing data. Supports Illumina and Oxford Nanopore reads for SARS-CoV-2, influenza, and other viral genomes
2 shared topics • 2 shared operations
FastQC — universal quality control tool for high-throughput sequencing data. Performs modular analysis of FASTQ and BAM files, generating per-base quality scores, GC content distribution, adapter cont
2 shared topics • 1 shared operation
IGV (Integrative Genomics Viewer) — high-performance Java desktop application for interactive visualization and exploration of genomic data. Supports BAM/CRAM alignments, VCF variants, BED/GFF annotat
2 shared topics • 1 shared operation