Genomepeek

Use when working with abricate — ABRicate — mass screening of contigs

2 shared topics • 1 shared operation

antiSMASH (antibiotic & Secondary Metabolite Analysis SHell) — genome mining tool for identifying and annotating biosynthetic gene clusters (BGCs) in bacterial and fungal genomes. Detects NRPS, PKS, t

2 shared topics • 1 shared operation

CheckV — assess quality and completeness of metagenome-assembled viral genomes (vMAGs) and contigs. Estimates genome completeness for circular and linear viral sequences using DTR/ITR detection, avera

2 shared topics • 1 shared operation

Use when working with dbCAN — run_dbcan — for CAZyme annotation of protein or genome sequences from metagenomics and microbiome studies. Annotates Carbohydrate-Active enZymes (CAZymes) including glyco

2 shared topics • 1 shared operation

VirSorter2 is a multi-classifier pipeline for identifying DNA and RNA viral sequences from metagenomic and genomic assemblies. It supports dsDNA phage, ssDNA, RNA, NCLDV, and lavidaviridae groups, out

2 shared topics • 1 shared operation