GENCODE

Funannotate is a eukaryotic genome annotation pipeline that integrates ab initio gene prediction, homology-based evidence, and functional annotation. Use when users ask about funannotate, eukaryotic g

2 shared topics • 2 shared operations

gffread -- GFF/GTF utility for filtering, converting, and extracting sequences from genome annotation files. Converts between GFF3 and GTF formats, extracts transcript (FASTA) and protein sequences fr

2 shared topics • 2 shared operations

MAKER — portable genome annotation pipeline that integrates ab initio gene predictors (SNAP, Augustus, GeneMark), protein and EST evidence alignment, and repeat masking to produce GFF3 gene models wit

2 shared topics • 2 shared operations

Use when working with VAST-TOOLS for alternative splicing analysis in RNA-seq data. Routes to references and scripts for VASTDB setup, splicing event quantification (PSI/PIR), differential splicing wi

1 shared topic • 3 shared operations

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2 shared topics • 1 shared operation