flowWorkspace

BPCells is a high-performance toolkit for large single-cell RNA-seq and ATAC-seq datasets. Use it when the user mentions BPCells, disk-backed sparse matrices, bitpacked single-cell storage, large 10x

1 shared topic • 2 shared operations

CellPhoneDB — repository of curated receptors, ligands, and their interactions for cell-cell communication analysis from single-cell RNA-seq data. Performs permutation-based statistical analysis (stat

1 shared topic • 2 shared operations

FlowJo v10 skill for flow-cytometry and mass-cytometry analysis workflows. Use when users need compensation setup, gating hierarchy design, batch processing, statistics table export, plugin-assisted a

1 shared topic • 2 shared operations

Leafcutter — annotation-free RNA splicing quantification from short-read RNA-seq data. Detects differential intron usage, alternative splicing events, outlier splicing (LeafcutterMD), and splicing QTL

1 shared topic • 2 shared operations

mclust — R package for Gaussian finite mixture models fitted via EM algorithm providing model-based clustering (automatic cluster number and covariance structure selection via BIC/ICL across 14 parame

1 shared topic • 2 shared operations