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scRepertoire -- R package for analyzing T cell receptor (TCR) and B cell receptor (BCR) repertoires from single-cell sequencing data. Integrates with Seurat and SingleCellExperiment objects to combine

2 shared topics • 1 shared operation

VISION (Viewpoint Informed Sequencing Analysis of Networks) is an R package for interpreting single-cell RNA-seq data by linking gene expression signatures to cell metadata through an interactive web

2 shared topics • 1 shared operation

CellTypist — automated cell type annotation for scRNA-seq using logistic regression with pre-trained immune models, majority voting refinement, multi-label classification, custom model training, cross

2 shared topics

CytoTRACE -- computational method for predicting relative differentiation state of cells from single-cell RNA-seq data. Uses gene counts (number of detectably expressed genes per cell) as a robust pro

2 shared topics

DecontX — R/Bioconductor method in the celda package for estimating and removing ambient RNA contamination from droplet-based single-cell RNA-seq data. Uses a Bayesian Dirichlet mixture model over cel

2 shared topics