ENmix

deepTools — suite of Python tools for efficient analysis and visualization of high-throughput sequencing data including ChIP-seq, ATAC-seq, MNase-seq, and RNA-seq. BAM-to-bigWig conversion with normal

1 shared topic • 3 shared operations

wateRmelon v2.16.0 — Bioconductor R package for Illumina 450K and EPIC DNA methylation array normalization and performance metrics. Provides 15 normalization methods (dasen, nasen, naten, danes, swan,

1 shared topic • 3 shared operations

Fastq Screen — Perl tool for screening FASTQ sequencing reads against multiple reference genomes to detect sample contamination. Maps reads to user-defined genome databases (human, mouse, E. coli, Phi

1 shared topic • 2 shared operations

RnBeads — comprehensive R/Bioconductor package for DNA methylation analysis. Supports Illumina Infinium arrays (450K, EPIC/850K), WGBS, RRBS, and other bisulfite sequencing platforms. Key capabilities

1 shared topic • 2 shared operations

SeSAMe (SEnsible Step-wise Analysis of DNA MEthylation BeadChips) — R/Bioconductor package for processing Illumina Infinium DNA methylation arrays. Supports EPIC, EPICv2, HM450, HM27, MM285, and Mamma

1 shared topic • 1 shared operation