RnBeads

CNVkit -- Python toolkit for detecting copy number variants (CNVs) from targeted DNA sequencing data (hybrid capture, amplicon) and whole-genome sequencing (WGS). Leverages both on-target and off-targ

2 shared topics • 1 shared operation

FAN-C is a Python framework for analysis, visualization, and exploration of Hi-C and related chromatin conformation capture data. Provides a unified API for importing, processing, and analyzing Hi-C c

2 shared topics • 1 shared operation

Fastq Screen — Perl tool for screening FASTQ sequencing reads against multiple reference genomes to detect sample contamination. Maps reads to user-defined genome databases (human, mouse, E. coli, Phi

2 shared topics • 1 shared operation

Use this skill for GATK-based DNA methylation and bisulfite sequencing workflows including WGBS preprocessing, base quality score recalibration for bisulfite data, duplicate marking of bisulfite reads

2 shared topics • 1 shared operation

NetCoMi (Network Construction and Comparison for Microbiome Data) — R package for constructing, analyzing, and comparing microbial association and dissimilarity networks from compositional count data.

2 shared topics • 1 shared operation