dplyr

Strelka2 — fast and accurate small variant caller for germline and somatic analysis. Detects SNVs and indels (up to ~49 bp) from mapped paired-end sequencing reads with tiered haplotype modeling, adap

1 shared topic • 2 shared operations

ballgown -- R/Bioconductor package for flexible isoform-level differential expression analysis of RNA-seq experiments. Works with StringTie output (.ctab files) to test for differential expression at

1 shared topic • 1 shared operation

BBDuk (Decontamination Using Kmers) — high-performance Java tool from the BBTools suite for adapter trimming, quality trimming, contaminant filtering, sequence masking, GC filtering, and format conver

1 shared topic • 1 shared operation

deepTools — suite of Python tools for efficient analysis and visualization of high-throughput sequencing data including ChIP-seq, ATAC-seq, MNase-seq, and RNA-seq. BAM-to-bigWig conversion with normal

1 shared topic • 1 shared operation

gffcompare -- Tool for comparing, merging, and annotating RNA-seq transcript assemblies against a reference annotation. Classifies each assembled transcript with a class code (=, c, j, u, x, i, p, r,

1 shared topic • 1 shared operation