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BugBase is a tool for analyzing microbiome data to predict organism-level phenotypes. It is particularly useful for soil science and terrestrial ecology, allowing users to analyze their microbiome sam
Use with AI
Install the MCP server or CLI to instantly fetch BugBase documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/bugbase
SpadeR (Species-richness Prediction And Diversity Estimation in R) estimates species richness and diversity indices from abundance or incidence-frequency data. Implements Chao1, ACE, jackknife, and bo
1 shared topic • 2 shared operations
Anvi'o — integrated analysis and visualization platform for 'omics data. Supports metagenomics (MAG binning, refinement, read recruitment), pangenomics (gene cluster analysis, ANI computation), phylog
1 shared topic • 1 shared operation
CNVkit -- Python toolkit for detecting copy number variants (CNVs) from targeted DNA sequencing data (hybrid capture, amplicon) and whole-genome sequencing (WGS). Leverages both on-target and off-targ
1 shared topic • 1 shared operation
Krona — interactive HTML pie chart visualization of hierarchical taxonomic data from metagenomics and sequence classification. Part of KronaTools, which provides importers for Kraken2, BLAST, Diamond,
1 shared topic • 1 shared operation
MaAsLin 2 (Microbiome Multivariable Association with Linear Models 2) is the bioBakery tool for finding associations between microbial features (taxa, functional pathways, gene families) and sample me
1 shared topic • 1 shared operation