breeder

Use when working with BE-Hive, the Shen lab base-editing outcome predictor distributed through the `be_predict_bystander` repository and the crisprbehive.design web app. BE-Hive predicts bystander edi

1 shared topic • 2 shared operations

CRISPRscan — sequence-based scoring algorithm for predicting CRISPR/Cas9 sgRNA on-target efficiency. Uses a linear regression model trained on zebrafish injection data to score 20-mer guide sequences

1 shared topic • 2 shared operations

MaxEnt (Maximum Entropy Modeling) for species distribution and ecological niche modeling from presence-only occurrence records and environmental predictors. Use this skill for SDM/ENM workflows, habit

1 shared topic • 2 shared operations

SpadeR (Species-richness Prediction And Diversity Estimation in R) estimates species richness and diversity indices from abundance or incidence-frequency data. Implements Chao1, ACE, jackknife, and bo

1 shared topic • 2 shared operations

TCGAbiolinks for searching, downloading, and analyzing cancer genomics data from the NCI Genomic Data Commons (GDC). Routes tasks for GDCquery/GDCdownload, data preparation with GDCprepare, differenti

1 shared topic • 1 shared operation